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monarch dna gel extraction kit  (New England Biolabs)


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    New England Biolabs monarch dna gel extraction kit
    Optimization of RPA primers and CRISPR/Cas12a detection for the Mycoplasma bovis uvrC gene. (A) Schematic of p‐uvrC generation by restriction cloning of a 558‐bp uvrC fragment, which was used as the standard <t>DNA</t> template. (B) Screening of eight RPA primer pairs (PP1–PP8) targeting uvrC; PP3–PP8 produced strong, specific amplicons, and target amplification was also detected in DNA from M. bovis ‐positive bison lung. (C) Sequence of three CRISPR guide RNAs (gRNA1–gRNA3) designed within the amplified uvrC region adjacent to 5′‐TTTG‐3′ PAM sites. (D) Comparison of Cas12a fluorescence kinetics showed that all three guides detected uvrC, with gRNA3 producing the fastest and strongest signal. (E) Optimization of ssDNA‐FQ reporter concentration identified 0.75 μM as the best condition for visual detection with minimal background, although maximal fluorescence was reached at 5 μM. (F) All guide RNA combinations produced detectable fluorescence with similar kinetics, although gRNA2 + 3 and gRNA1 + 2 + 3 showed slightly faster onset.
    Monarch Dna Gel Extraction Kit, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 1469 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/monarch+dna+gel+extraction+kit/Monarch+Spin+DNA+Gel+Extraction+Kit/pmc13657075-62-9-14
    Average 99 stars, based on 1469 article reviews
    monarch dna gel extraction kit - by Bioz Stars, 2026-10
    99/100 stars

    Images

    1) Product Images from "Synergistic Integration of Recombinase Polymerase Amplification and CRISPR–Cas12a Enables High‐Sensitivity Detection of Mycoplasma bovis"

    Article Title: Synergistic Integration of Recombinase Polymerase Amplification and CRISPR–Cas12a Enables High‐Sensitivity Detection of Mycoplasma bovis

    Journal: MicrobiologyOpen

    doi: 10.1002/mbo3.70435

    Optimization of RPA primers and CRISPR/Cas12a detection for the Mycoplasma bovis uvrC gene. (A) Schematic of p‐uvrC generation by restriction cloning of a 558‐bp uvrC fragment, which was used as the standard DNA template. (B) Screening of eight RPA primer pairs (PP1–PP8) targeting uvrC; PP3–PP8 produced strong, specific amplicons, and target amplification was also detected in DNA from M. bovis ‐positive bison lung. (C) Sequence of three CRISPR guide RNAs (gRNA1–gRNA3) designed within the amplified uvrC region adjacent to 5′‐TTTG‐3′ PAM sites. (D) Comparison of Cas12a fluorescence kinetics showed that all three guides detected uvrC, with gRNA3 producing the fastest and strongest signal. (E) Optimization of ssDNA‐FQ reporter concentration identified 0.75 μM as the best condition for visual detection with minimal background, although maximal fluorescence was reached at 5 μM. (F) All guide RNA combinations produced detectable fluorescence with similar kinetics, although gRNA2 + 3 and gRNA1 + 2 + 3 showed slightly faster onset.
    Figure Legend Snippet: Optimization of RPA primers and CRISPR/Cas12a detection for the Mycoplasma bovis uvrC gene. (A) Schematic of p‐uvrC generation by restriction cloning of a 558‐bp uvrC fragment, which was used as the standard DNA template. (B) Screening of eight RPA primer pairs (PP1–PP8) targeting uvrC; PP3–PP8 produced strong, specific amplicons, and target amplification was also detected in DNA from M. bovis ‐positive bison lung. (C) Sequence of three CRISPR guide RNAs (gRNA1–gRNA3) designed within the amplified uvrC region adjacent to 5′‐TTTG‐3′ PAM sites. (D) Comparison of Cas12a fluorescence kinetics showed that all three guides detected uvrC, with gRNA3 producing the fastest and strongest signal. (E) Optimization of ssDNA‐FQ reporter concentration identified 0.75 μM as the best condition for visual detection with minimal background, although maximal fluorescence was reached at 5 μM. (F) All guide RNA combinations produced detectable fluorescence with similar kinetics, although gRNA2 + 3 and gRNA1 + 2 + 3 showed slightly faster onset.

    Techniques Used: CRISPR, Cloning, Screening, Produced, Amplification, Sequencing, Comparison, Fluorescence, Concentration Assay

    Related Articles

    Purification:

    Article Title: The NFIL3-MYC signaling axis: a novel therapeutic target and prognostic marker in high-risk multiple myeloma
    Article Snippet: Briefly, ChIP DNA was end-repaired, A-tailed, Illumina adaptors were ligated, and the DNA was separated on a 2% agarose gel. .. DNA fragments of 200 bps were excised and purified using a Monarch DNA Gel Extraction Kit (New England Biolabs). .. Size-selected DNA was amplified with NEBNext Multiplex Oligos for Illumina (Index Primer Set 1 and Set 2) by PCR, purified with Agencourt AMPure XP Beads (Beckman Coulter) and the concentration of the libraries was estimated with the Quanti-iTTM PicoGreen dsDNA Assay Kit (Thermo Fisher Scientific).

    Article Title: Tuning intracellular immunity by Nodamura virus B2 protein enhances self-amplifying RNA activity
    Article Snippet: CHIKV ERR and VEEV plasmids were linearised using NotI (R0189S, New England Biolabs), and MluI (R3198S, New England Biolabs), respectively. .. Linearised plasmids were run on agarose electrophoresis and gel purified (Monarch DNA Gel extraction kit, New England Biolabs). ..

    Article Title: A geothermal amoeba sets a new upper temperature limit for eukaryotes
    Article Snippet: PCR conditions followed the Q5 Hot Start Master Mix protocol (New England Biolabs): 98°C for 30 seconds, 34 cycles of 98°C for 10 seconds, 67°C for 30 seconds, 72°C for 1 minute, then 72°C for 2 minutes. .. We visualized the resulting amplicons by gel electrophoresis and then excised and purified bands of approximately 3 kb ( I. cascadensis ) and 1.8 kb ( V. vermiformis ) using the Monarch DNA Gel Extraction Kit (New England Biolabs) according to the manufacturer’s instructions. .. Using the TOPO TA Cloning Kit (Invitrogen) and following the manufacturer’s protocol for chemical transformation, we ligated purified amplicons into the pCR4-TOPO vector and transformed into One Shot competent cells, plated on LB agar with kanamycin (50 μg/mL), and screened by PCR using M13 primers.

    Article Title: Synergistic Integration of Recombinase Polymerase Amplification and CRISPR–Cas12a Enables High‐Sensitivity Detection of Mycoplasma bovis
    Article Snippet: Purified DNA was digested with SpeI‐HF and EcoRV‐HF restriction enzymes (New England Biolabs) and resolved on a 1.5% agarose gel. .. The target band was excised and purified using the Monarch DNA Gel Extraction Kit (New England Biolabs). .. The purified and gel extracted 558 base pair fragment of the uvrC gene was cloned into the pCR‐Blunt II‐TOPO vector (Zero Blunt TOPO PCR Cloning Kit, Invitrogen), which had been pre‐digested with SpeI‐HF and EcoRV‐HF restriction enzymes (New England Biolabs).

    Article Title: The pathogenic p.D1108N SORL1 variant is dominant-negative and suitable for an antisense-oligonucleotide-mediated splice-modulating therapy for Alzheimer’s disease
    Article Snippet: .. Full-length and Δex23 DNA products from the PCR were excised from the gel under UV illumination and purified using the Monarch DNA Gel Extraction Kit (New England Biolabs) following the manufacturer’s protocol. .. Purified DNA products were subsequently subjected to Sanger sequencing with the forward PCR primer (Eurofins Genomics).

    Article Title: Dual-fluorescence reporter-based assay for rapid quantitative evaluation of antiviral activity against Venezuelan equine encephalitis virus
    Article Snippet: Amplified products were separated in a 1% agarose gel stained with GelGreen (Biotium), and bands of the expected sizes were visualized under green LED excitation using an iBright imaging system (Thermo Fisher Scientific). .. Target bands were excised and purified with the Monarch DNA Gel Extraction Kit (New England Biolabs) according to the manufacturer’s instructions. .. AR TIC LE IN PR ES S ARTICLE IN PRESS Adjacent synthetic DNA fragments (2–3 blocks, each ~3 kb with ~10 nt overlaps) were first assembled using the NEBuilder HiFi DNA Assembly Master Mix (New England BioLabs) in 20 μL reactions, incubated at 50 °C for 15 min.

    Gel Extraction:

    Article Title: The NFIL3-MYC signaling axis: a novel therapeutic target and prognostic marker in high-risk multiple myeloma
    Article Snippet: Briefly, ChIP DNA was end-repaired, A-tailed, Illumina adaptors were ligated, and the DNA was separated on a 2% agarose gel. .. DNA fragments of 200 bps were excised and purified using a Monarch DNA Gel Extraction Kit (New England Biolabs). .. Size-selected DNA was amplified with NEBNext Multiplex Oligos for Illumina (Index Primer Set 1 and Set 2) by PCR, purified with Agencourt AMPure XP Beads (Beckman Coulter) and the concentration of the libraries was estimated with the Quanti-iTTM PicoGreen dsDNA Assay Kit (Thermo Fisher Scientific).

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    Article Snippet: .. The PCR product was run on an agarose gel, gel‐purified (Monarch DNA Gel Extraction Kit, New England BioLabs) and then sent to Eurofin Genomics for Nanopore amplicon sequencing ( https://eurofinsgenomics.com ). ..

    Article Title: Tuning intracellular immunity by Nodamura virus B2 protein enhances self-amplifying RNA activity
    Article Snippet: CHIKV ERR and VEEV plasmids were linearised using NotI (R0189S, New England Biolabs), and MluI (R3198S, New England Biolabs), respectively. .. Linearised plasmids were run on agarose electrophoresis and gel purified (Monarch DNA Gel extraction kit, New England Biolabs). ..

    Article Title: A geothermal amoeba sets a new upper temperature limit for eukaryotes
    Article Snippet: PCR conditions followed the Q5 Hot Start Master Mix protocol (New England Biolabs): 98°C for 30 seconds, 34 cycles of 98°C for 10 seconds, 67°C for 30 seconds, 72°C for 1 minute, then 72°C for 2 minutes. .. We visualized the resulting amplicons by gel electrophoresis and then excised and purified bands of approximately 3 kb ( I. cascadensis ) and 1.8 kb ( V. vermiformis ) using the Monarch DNA Gel Extraction Kit (New England Biolabs) according to the manufacturer’s instructions. .. Using the TOPO TA Cloning Kit (Invitrogen) and following the manufacturer’s protocol for chemical transformation, we ligated purified amplicons into the pCR4-TOPO vector and transformed into One Shot competent cells, plated on LB agar with kanamycin (50 μg/mL), and screened by PCR using M13 primers.

    Article Title: Validation of next‑generation sequencing‑derived circulating mRNA variants as potential diagnostic tools in hepatocellular carcinoma and cholangiocarcinoma.
    Article Snippet: .. Using the Monarch DNA Gel Extraction kit (New England BioLabs, Inc.), the DNA in the band was isolated and eluted according to the manufac‐ turer's protocol. .. The isolated DNA was sent to Azenta Life Sciences with the appropriate forward primer (Table SIV) for Sanger sequencing.

    Article Title: Synergistic Integration of Recombinase Polymerase Amplification and CRISPR–Cas12a Enables High‐Sensitivity Detection of Mycoplasma bovis
    Article Snippet: Purified DNA was digested with SpeI‐HF and EcoRV‐HF restriction enzymes (New England Biolabs) and resolved on a 1.5% agarose gel. .. The target band was excised and purified using the Monarch DNA Gel Extraction Kit (New England Biolabs). .. The purified and gel extracted 558 base pair fragment of the uvrC gene was cloned into the pCR‐Blunt II‐TOPO vector (Zero Blunt TOPO PCR Cloning Kit, Invitrogen), which had been pre‐digested with SpeI‐HF and EcoRV‐HF restriction enzymes (New England Biolabs).

    Article Title: The pathogenic p.D1108N SORL1 variant is dominant-negative and suitable for an antisense-oligonucleotide-mediated splice-modulating therapy for Alzheimer’s disease
    Article Snippet: .. Full-length and Δex23 DNA products from the PCR were excised from the gel under UV illumination and purified using the Monarch DNA Gel Extraction Kit (New England Biolabs) following the manufacturer’s protocol. .. Purified DNA products were subsequently subjected to Sanger sequencing with the forward PCR primer (Eurofins Genomics).

    Article Title: Dual-fluorescence reporter-based assay for rapid quantitative evaluation of antiviral activity against Venezuelan equine encephalitis virus
    Article Snippet: Amplified products were separated in a 1% agarose gel stained with GelGreen (Biotium), and bands of the expected sizes were visualized under green LED excitation using an iBright imaging system (Thermo Fisher Scientific). .. Target bands were excised and purified with the Monarch DNA Gel Extraction Kit (New England Biolabs) according to the manufacturer’s instructions. .. AR TIC LE IN PR ES S ARTICLE IN PRESS Adjacent synthetic DNA fragments (2–3 blocks, each ~3 kb with ~10 nt overlaps) were first assembled using the NEBuilder HiFi DNA Assembly Master Mix (New England BioLabs) in 20 μL reactions, incubated at 50 °C for 15 min.

    Polymerase Chain Reaction:

    Article Title: Phylogenetic Placement and Morphological Description of Three Species of Heterotrophic Euglenids (Euglenozoa) From Arizona: Scytomonas flumensis n. sp., Ploeotia protuberantia n. sp., and Hokulea pusilla comb. nov
    Article Snippet: .. The PCR product was run on an agarose gel, gel‐purified (Monarch DNA Gel Extraction Kit, New England BioLabs) and then sent to Eurofin Genomics for Nanopore amplicon sequencing ( https://eurofinsgenomics.com ). ..

    Article Title: The pathogenic p.D1108N SORL1 variant is dominant-negative and suitable for an antisense-oligonucleotide-mediated splice-modulating therapy for Alzheimer’s disease
    Article Snippet: .. Full-length and Δex23 DNA products from the PCR were excised from the gel under UV illumination and purified using the Monarch DNA Gel Extraction Kit (New England Biolabs) following the manufacturer’s protocol. .. Purified DNA products were subsequently subjected to Sanger sequencing with the forward PCR primer (Eurofins Genomics).

    Agarose Gel Electrophoresis:

    Article Title: Phylogenetic Placement and Morphological Description of Three Species of Heterotrophic Euglenids (Euglenozoa) From Arizona: Scytomonas flumensis n. sp., Ploeotia protuberantia n. sp., and Hokulea pusilla comb. nov
    Article Snippet: .. The PCR product was run on an agarose gel, gel‐purified (Monarch DNA Gel Extraction Kit, New England BioLabs) and then sent to Eurofin Genomics for Nanopore amplicon sequencing ( https://eurofinsgenomics.com ). ..

    Amplification:

    Article Title: Phylogenetic Placement and Morphological Description of Three Species of Heterotrophic Euglenids (Euglenozoa) From Arizona: Scytomonas flumensis n. sp., Ploeotia protuberantia n. sp., and Hokulea pusilla comb. nov
    Article Snippet: .. The PCR product was run on an agarose gel, gel‐purified (Monarch DNA Gel Extraction Kit, New England BioLabs) and then sent to Eurofin Genomics for Nanopore amplicon sequencing ( https://eurofinsgenomics.com ). ..

    Sequencing:

    Article Title: Phylogenetic Placement and Morphological Description of Three Species of Heterotrophic Euglenids (Euglenozoa) From Arizona: Scytomonas flumensis n. sp., Ploeotia protuberantia n. sp., and Hokulea pusilla comb. nov
    Article Snippet: .. The PCR product was run on an agarose gel, gel‐purified (Monarch DNA Gel Extraction Kit, New England BioLabs) and then sent to Eurofin Genomics for Nanopore amplicon sequencing ( https://eurofinsgenomics.com ). ..

    Electrophoresis:

    Article Title: Tuning intracellular immunity by Nodamura virus B2 protein enhances self-amplifying RNA activity
    Article Snippet: CHIKV ERR and VEEV plasmids were linearised using NotI (R0189S, New England Biolabs), and MluI (R3198S, New England Biolabs), respectively. .. Linearised plasmids were run on agarose electrophoresis and gel purified (Monarch DNA Gel extraction kit, New England Biolabs). ..

    Gel Electrophoresis:

    Article Title: A geothermal amoeba sets a new upper temperature limit for eukaryotes
    Article Snippet: PCR conditions followed the Q5 Hot Start Master Mix protocol (New England Biolabs): 98°C for 30 seconds, 34 cycles of 98°C for 10 seconds, 67°C for 30 seconds, 72°C for 1 minute, then 72°C for 2 minutes. .. We visualized the resulting amplicons by gel electrophoresis and then excised and purified bands of approximately 3 kb ( I. cascadensis ) and 1.8 kb ( V. vermiformis ) using the Monarch DNA Gel Extraction Kit (New England Biolabs) according to the manufacturer’s instructions. .. Using the TOPO TA Cloning Kit (Invitrogen) and following the manufacturer’s protocol for chemical transformation, we ligated purified amplicons into the pCR4-TOPO vector and transformed into One Shot competent cells, plated on LB agar with kanamycin (50 μg/mL), and screened by PCR using M13 primers.

    Isolation:

    Article Title: Validation of next‑generation sequencing‑derived circulating mRNA variants as potential diagnostic tools in hepatocellular carcinoma and cholangiocarcinoma.
    Article Snippet: .. Using the Monarch DNA Gel Extraction kit (New England BioLabs, Inc.), the DNA in the band was isolated and eluted according to the manufac‐ turer's protocol. .. The isolated DNA was sent to Azenta Life Sciences with the appropriate forward primer (Table SIV) for Sanger sequencing.



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    Image Search Results


    Optimization of RPA primers and CRISPR/Cas12a detection for the Mycoplasma bovis uvrC gene. (A) Schematic of p‐uvrC generation by restriction cloning of a 558‐bp uvrC fragment, which was used as the standard DNA template. (B) Screening of eight RPA primer pairs (PP1–PP8) targeting uvrC; PP3–PP8 produced strong, specific amplicons, and target amplification was also detected in DNA from M. bovis ‐positive bison lung. (C) Sequence of three CRISPR guide RNAs (gRNA1–gRNA3) designed within the amplified uvrC region adjacent to 5′‐TTTG‐3′ PAM sites. (D) Comparison of Cas12a fluorescence kinetics showed that all three guides detected uvrC, with gRNA3 producing the fastest and strongest signal. (E) Optimization of ssDNA‐FQ reporter concentration identified 0.75 μM as the best condition for visual detection with minimal background, although maximal fluorescence was reached at 5 μM. (F) All guide RNA combinations produced detectable fluorescence with similar kinetics, although gRNA2 + 3 and gRNA1 + 2 + 3 showed slightly faster onset.

    Journal: MicrobiologyOpen

    Article Title: Synergistic Integration of Recombinase Polymerase Amplification and CRISPR–Cas12a Enables High‐Sensitivity Detection of Mycoplasma bovis

    doi: 10.1002/mbo3.70435

    Figure Lengend Snippet: Optimization of RPA primers and CRISPR/Cas12a detection for the Mycoplasma bovis uvrC gene. (A) Schematic of p‐uvrC generation by restriction cloning of a 558‐bp uvrC fragment, which was used as the standard DNA template. (B) Screening of eight RPA primer pairs (PP1–PP8) targeting uvrC; PP3–PP8 produced strong, specific amplicons, and target amplification was also detected in DNA from M. bovis ‐positive bison lung. (C) Sequence of three CRISPR guide RNAs (gRNA1–gRNA3) designed within the amplified uvrC region adjacent to 5′‐TTTG‐3′ PAM sites. (D) Comparison of Cas12a fluorescence kinetics showed that all three guides detected uvrC, with gRNA3 producing the fastest and strongest signal. (E) Optimization of ssDNA‐FQ reporter concentration identified 0.75 μM as the best condition for visual detection with minimal background, although maximal fluorescence was reached at 5 μM. (F) All guide RNA combinations produced detectable fluorescence with similar kinetics, although gRNA2 + 3 and gRNA1 + 2 + 3 showed slightly faster onset.

    Article Snippet: The target band was excised and purified using the Monarch DNA Gel Extraction Kit (New England Biolabs).

    Techniques: CRISPR, Cloning, Screening, Produced, Amplification, Sequencing, Comparison, Fluorescence, Concentration Assay